Package: switchr 0.14.5.1

switchr: Installing, Managing, and Switching Between Distinct Sets of Installed Packages

Provides an abstraction for managing, installing, and switching between sets of installed R packages. This allows users to maintain multiple package libraries simultaneously, e.g. to maintain strict, package-version-specific reproducibility of many analyses, or work within a development/production release paradigm. Introduces a generalized package installation process which supports multiple repository and non-repository sources and tracks package provenance.

Authors:Gabriel Becker[aut, cre]

switchr_0.14.5.1.tar.gz
switchr_0.14.5.1.zip(r-4.7-any)switchr_0.14.5.1.zip(r-4.6-any)switchr_0.14.5.1.zip(r-4.5-any)
switchr_0.14.5.1.tgz(r-4.6-any)switchr_0.14.5.1.tgz(r-4.5-any)
switchr_0.14.5.1.tar.gz(r-4.7-any)switchr_0.14.5.1.tar.gz(r-4.6-any)
switchr_0.14.5.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
switchr/json (API)

# Install 'switchr' in R:

install.packages('switchr', repos = c('https://gmbecker.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/gmbecker/switchr/issues

On CRAN:

6.56 score 60 stars 61 scripts 324 downloads 2 mentions 90 exports 3 dependencies

Last updated from:4d4e72f200. Checks:7 ERROR, 2 OK. Indexed: yes.

Target	Result	Time
linux-devel	ERROR	119
source / vignettes	OK	162
linux-release	ERROR	118
macos-release	ERROR	142
macos-oldrel	ERROR	173
windows-devel	ERROR	107
windows-release	ERROR	105
windows-oldrel	ERROR	98
wasm-release	OK	90

Exports:.libPaths2 addPkg archive_retries archive_retries<-archive_timing archive_timing<-BiocDevel BiocRelease biocReposForVers BiocSVNManifest BiocVers branch checkIsPkgDir cranPkgVersManifest currentCompEnv defaultRepos dep_repos dep_repos<-dl_method dl_method<-errorOrNonZero fileFromFileURL findNewestPkgInds findNewestPkgRows findPkgDir findPkgVersionInRepo flushSession full_libpaths getPkgDir GithubManifest gotoVersCommit graceful_inet head install_packages lazyRepo libManifest library_paths loadGRAN loadManifest locatePkgVersion location logfun logfun<-makeBiocSVNURL makeFileURL makeLibraryCtx makeManifest makePkgCheckout makePkgDir makeSeedMan makeSource manifest manifest_df manifest_df<-manifest<-manifestFromCheckoutDir ManifestRow normalizePath2 notrack nrow packages parseSessionInfoString PkgManifest pkgname publishManifest removeLib RepoSubset rVersionManifest SessionManifest sh_init_script sh_init_script<-shell_timing shell_timing<-subdir subdir<-switchBack switchDeps switchrBaseDir SwitchrCtx switchrDontUnload switchrManifest switchrNoUnload SwitchrParam switchTo system_w_init tail update_PACKAGES versions_df versions_df<-warning2

Dependencies:bitops RCurl RJSONIO

switchr basics2

Managing and populating package libraries | Installing specific packages and package versions | Using switchr in dynamic documents

Rendered fromswitchrvign.Rnwusingutils::Sweave

Last update: 2020-01-23
Started: 2015-05-13

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
.libpaths2	.libPaths2
addPkg	addPkg addPkg,PkgManifest addPkg,PkgManifest-method addPkg,SessionManifest addPkg,SessionManifest-method
archive_retries	archive_retries archive_retries,SwitchrParam archive_retries,SwitchrParam-method archive_retries<- archive_retries<-,SwitchrParam archive_retries<-,SwitchrParam-method
archive_timing	archive_timing archive_timing,SwitchrParam archive_timing,SwitchrParam-method archive_timing<- archive_timing<-,SwitchrParam archive_timing<-,SwitchrParam-method
BiocDevel	BiocDevel
BiocRelease	BiocRelease
biocReposForVers	biocReposForVers
DEPCRECATED - Create a manifest of Bioc SVN locations	BiocSVNManifest
BiocVers	BiocVers
branch	branch branch,PkgSource branch,PkgSource-method branch<- branch<-,PkgSource branch<-,PkgSource-method
cmethods	c,PkgManifest-method c,SessionManifest-method
Check if a directory contains package sources	checkIsPkgDir
cranPkgVersManifest	cranPkgVersManifest
currentCompEnv	currentCompEnv
defaultRepos	defaultRepos
dep_repos	dep_repos dep_repos,PkgManifest dep_repos,PkgManifest-method dep_repos,SessionManifest dep_repos,SessionManifest-method dep_repos<- dep_repos<-,PkgManifest dep_repos<-,PkgManifest-method dep_repos<-,SessionManifest dep_repos<-,SessionManifest-method
dl_method	dl_method dl_method,SwitchrParam dl_method,SwitchrParam-method dl_method<- dl_method<-,SwitchrParam dl_method<-,SwitchrParam-method
Identify error states from R or external programs	errorOrNonZero
Get path from file URL	fileFromFileURL
Find newest packages in a package info data.frame	findNewestPkgInds findNewestPkgRows
Find a package directory within an SCM checkout	findPkgDir
findPkgVersionInRepo	findPkgVersionInRepo findPkgVersionInRepo,character findPkgVersionInRepo,character-method findPkgVersionInRepo,NULL findPkgVersionInRepo,NULL-method
flushSession	flushSession
full_libpaths	full_libpaths full_libpaths,SwitchrCtx full_libpaths,SwitchrCtx-method
Construct pockage directory path	getPkgDir
GithubManifest	GithubManifest
gotoVersCommit	gotoVersCommit gotoVersCommit,character,BiocSource gotoVersCommit,character,BiocSource-method gotoVersCommit,character,CRANSource gotoVersCommit,character,CRANSource-method gotoVersCommit,character,GitSource gotoVersCommit,character,GitSource-method gotoVersCommit,character,SVNSource gotoVersCommit,character,SVNSource-method
Internal internet harness	graceful_inet warning2
Head and tail operations on manifests	head head,PkgManifest head,PkgManifest-method head,SessionManifest head,SessionManifest-method tail tail,PkgManifest tail,PkgManifest-method tail,SessionManifest tail,SessionManifest-method
install_packages	install_packages install_packages,character,character install_packages,character,character-method install_packages,character,missing install_packages,character,missing-method install_packages,character,PkgManifest install_packages,character,PkgManifest-method install_packages,character,SessionManifest install_packages,character,SessionManifest-method install_packages,SessionManifest,ANY install_packages,SessionManifest,ANY-method
lazyRepo	lazyRepo lazyRepo,character,PkgManifest lazyRepo,character,PkgManifest-method lazyRepo,character,SessionManifest lazyRepo,character,SessionManifest-method lazyRepo,PkgManifest,ANY lazyRepo,PkgManifest,ANY-method lazyRepo,SessionManifest,ANY lazyRepo,SessionManifest,ANY-method
libManifest	libManifest libManifest,character libManifest,character-method libManifest,missing libManifest,missing-method libManifest,SwitchrCtx libManifest,SwitchrCtx-method
library_paths	library_paths library_paths,SwitchrCtx library_paths,SwitchrCtx-method
LibraryProfile (experimental)	LibraryProfile-class
Load a GRAN repo package	loadGRAN
loadManifest	loadManifest
locatePkgVersion	locatePkgVersion
location	location location,PkgSource-method
logfun	logfun logfun,SwitchrParam logfun,SwitchrParam-method logfun<- logfun<-,SwitchrParam logfun<-,SwitchrParam-method
Make a Bioconductor SVN url for a package	makeBiocSVNURL
make file url	makeFileURL
makeLibraryCtx	makeLibraryCtx
Manifest constructor	makeManifest
Create a checkout of a package and all it's dependencies from a manifest	makePkgCheckout
makePkgDir	makePkgDir makePkgDir,ANY,ANY makePkgDir,ANY,ANY-method makePkgDir,ANY,BiocSource makePkgDir,ANY,BiocSource-method makePkgDir,ANY,CRANSource makePkgDir,ANY,CRANSource-method makePkgDir,ANY,GithubSource makePkgDir,ANY,GithubSource-method makePkgDir,ANY,GitSource makePkgDir,ANY,GitSource-method makePkgDir,ANY,LocalSource makePkgDir,ANY,LocalSource-method makePkgDir,ANY,SVNSource makePkgDir,ANY,SVNSource-method makePkgDir,ANY,TarballSource makePkgDir,ANY,TarballSource-method
makeSeedMan	makeSeedMan makeSeedMan,data.frame makeSeedMan,data.frame-method makeSeedMan,missing makeSeedMan,missing-method makeSeedMan,parsedSessionInfo makeSeedMan,parsedSessionInfo-method makeSeedMan,sessionInfo makeSeedMan,sessionInfo-method
Create a PkgSource object for a package	makeSource
Get or set the manifest associated with an object	manifest manifest,SessionManifest manifest,SessionManifest-method manifest<- manifest<-,SessionManifest manifest<-,SessionManifest-method
manifest_df	manifest_df manifest_df,PkgManifest manifest_df,PkgManifest-method manifest_df,SessionManifest manifest_df,SessionManifest-method manifest_df<- manifest_df<-,PkgManifest manifest_df<-,PkgManifest-method manifest_df<-,SessionManifest manifest_df<-,SessionManifest-method
Create Manifest from 'checkedout' directory containing many pkg dirs	manifestFromCheckoutDir
ManifestRow	ManifestRow
normalizePath2	normalizePath2
Notrack directory	notrack notrack,NULL notrack,NULL-method
Number of rows	nrow nrow,PkgManifest nrow,PkgManifest-method nrow,SessionManifest nrow,SessionManifest-method
packages	packages packages,SwitchrCtx packages,SwitchrCtx-method
Parsed sessionInfo output	parsedSessionInfo-class
Parse text output from printing SessionInfo objects	parseSessionInfoString
PkgManifest	PkgManifest PkgManifest-class
pkgname	pkgname pkgname,PkgSource pkgname,PkgSource-method pkgname<- pkgname<-,PkgSource pkgname<-,PkgSource-method
PkgSource	BiocSource-class CRANSource-class CVSSource-class GithubSource-class GitSource-class LocalSource-class PkgSource-class SVNSource-class TarballSource-class
publishManifest	publishManifest publishManifest,missing,ANY publishManifest,missing,ANY-method publishManifest,PkgManifest,character publishManifest,PkgManifest,character-method publishManifest,SessionManifest,character publishManifest,SessionManifest,character-method publishManifest,SwitchrCtx,ANY publishManifest,SwitchrCtx,ANY-method
removeLib	removeLib
RepoSubset	RepoSubset RepoSubset-class
rVersionManifest	rVersionManifest
SessionManifest	SessionManifest SessionManifest-class
shell init	sh_init_script sh_init_script,SwitchrParam sh_init_script,SwitchrParam-method sh_init_script<- sh_init_script<-,SwitchrParam,ANY sh_init_script<-,SwitchrParam-method
Get or set the number of seconds to wait between successive shell commands	shell_timing shell_timing,SwitchrParam shell_timing,SwitchrParam-method shell_timing<- shell_timing<-,SwitchrParam shell_timing<-,SwitchrParam-method
subdir	subdir subdir,PkgSource subdir,PkgSource-method subdir<- subdir<-,PkgSource subdir<-,PkgSource-method
switchBack	switchBack
switchrDeps	switchDeps
Get or set the base directory for switchr libraries	switchrBaseDir
SwitchrCtx	SwitchrCtx SwitchrCtx-class
Get or set packages to not unload when flushing the system	switchrDontUnload
switchrManifest	switchrManifest
Skip unloading of packages in session	switchrNoUnload
SwitchrParam	SwitchrParam SwitchrParam-class
switchTo	switchTo switchTo,character,character switchTo,character,character-method switchTo,character,missing switchTo,character,missing-method switchTo,character,PkgManifest switchTo,character,PkgManifest-method switchTo,character,RepoSubset switchTo,character,RepoSubset-method switchTo,character,SessionManifest switchTo,character,SessionManifest-method switchTo,character,SwitchrCtx switchTo,character,SwitchrCtx-method switchTo,SwitchrCtx,ANY switchTo,SwitchrCtx,ANY-method
system_w_init	system_w_init
update existing package repository	update_PACKAGES
updateManifest	updateManifest
versions_df	versions_df versions_df,SessionManifest versions_df,SessionManifest-method versions_df<- versions_df<-,SessionManifest versions_df<-,SessionManifest-method