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junco - Create Common Tables and Listings Used in Clinical Trials

Structure and formatting requirements for clinical trial table and listing outputs vary between pharmaceutical companies. 'junco' provides additional tooling for use alongside the 'rtables', 'rlistings' and 'tern' packages when creating table and listing outputs. While motivated by the specifics of Johnson and Johnson Clinical and Statistical Programming's table and listing shells, 'junco' provides functionality that is general and reusable. Major features include a) alternative and extended statistical analyses beyond what 'tern' supports for use in standard safety and efficacy tables, b) a robust production-grade Rich Text Format (RTF) and DOCX exporter for tables, listings and graphs, c) structural support for spanning column headers and risk difference columns in tables, and d) robust font-aware automatic column width algorithms for both listings and tables.

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9.29 score 9 stars 1 dependents 304 scripts 742 downloads

CodeDepends - Analysis of R Code for Reproducible Research and Code Comprehension

Tools for analyzing R expressions or blocks of code and determining the dependencies between them. It focuses on R scripts, but can be used on the bodies of functions. There are many facilities including the ability to summarize or get a high-level view of code, determining dependencies between variables, code improvement suggestions.

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6.97 score 93 stars 1 dependents 84 scripts 677 downloads

switchr - Installing, Managing, and Switching Between Distinct Sets of Installed Packages

Provides an abstraction for managing, installing, and switching between sets of installed R packages. This allows users to maintain multiple package libraries simultaneously, e.g. to maintain strict, package-version-specific reproducibility of many analyses, or work within a development/production release paradigm. Introduces a generalized package installation process which supports multiple repository and non-repository sources and tracks package provenance.

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6.49 score 60 stars 52 scripts 252 downloads

SearchTrees - Spatial Search Trees

The QuadTree data structure is useful for fast, neighborhood-restricted lookups. We use it to implement fast k-Nearest Neighbor and Rectangular range lookups in 2 dimenions. The primary target is high performance interactive graphics.

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3.91 score 2 stars 3 dependents 45 scripts 445 downloads